Lessons
Introduction
Unit I: The Unix Shell
- Introducing the Shell
- Files and Directories
- Creating Things
- Pipes and Filters
- Loops
- Shell Scripts
- Finding Things
- Reference…
Unit II: Version Control with Git
- Automated Version Control
- Setting Up Git
- Creating a Repository
- Tracking Changes
- Exploring History
- Ignoring Things
- Remotes in GitHub
- Collaborating
- Conflicts
- Reference…
Unit III: Programming with Python
- Analyzing Data with NumPy
- Repeating Actions with Loops
- Storing Multiple Values in Lists
- Analyzing Data from Multiple Files
- Making Choices
- Creating Functions
- Errors and Exceptions
- Defensive Programming
- Debugging
- Command-Line Protrams
- Reference…
Unit IV: Distributed High Throughput Computing
- Introduction to Open Science Grid
- Submitting Jobs - HTCondor
- Scaling Up Resources - R and MATLAB runtime examples
- Troubleshooting
- Data Storage and Transfer
- Handling Job Dependencies - DAGMan
- Large Scale Computation with Pegasus (optional)