Lessons

Introduction

Unit I: The Unix Shell

  1. Introducing the Shell
  2. Files and Directories
  3. Creating Things
  4. Pipes and Filters
  5. Loops
  6. Shell Scripts
  7. Finding Things
  8. Reference…

Unit II: Version Control with Git

  1. Introducing Version Control
  2. A Better Kind of Backup
  3. Collaborating
  4. Conflicts
  5. Open Science
  6. Reference…

Unit III: Programming with Python

  1. Analyzing Patient Data
  2. Creating Functions
  3. Analyzing Multiple Data Sets
  4. Making Choices
  5. Defensive Programming
  6. Command-Line Programs
  7. Reference…

Unit IV: Distributed Computing on Open Science Grid

  1. Introduction to Open Science Grid
  2. Getting access to OSG
  3. Software Resources on OSG
  4. Submitting Jobs - HTCondor
  5. Scaling Up Resources
  6. Data Storage and Transfer
  7. Workflow Management - DAGMan
  8. Troubleshooting

Further Materials

Glossary